Variant report

Variant	rs73020273
Chromosome Location	chr3:157121788-157121789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56851214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56982459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57459645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012170	1.00[AMR][1000 genomes]
rs73012193	1.00[AMR][1000 genomes]
rs73016274	1.00[AMR][1000 genomes]
rs73018262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:157107800-157123000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:157109400-157122800	Weak transcription	Osteobl	bone
5	chr3:157113400-157122600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157113400-157129800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:157116000-157128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:157120200-157135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:157120400-157123000	Weak transcription	NH-A	brain
12	chr3:157121600-157122200	Strong transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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