Variant report

Variant	rs56982459
Chromosome Location	chr3:157108066-157108067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56851214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57459645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012170	1.00[AMR][1000 genomes]
rs73012193	1.00[AMR][1000 genomes]
rs73016274	1.00[AMR][1000 genomes]
rs73018262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020298	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157088000-157108600	Weak transcription	Lung	lung
2	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
4	chr3:157104000-157108400	Weak transcription	Aorta	Aorta
5	chr3:157104600-157108600	Weak transcription	Ovary	ovary
6	chr3:157105200-157109200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:157106400-157108600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:157106400-157108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157106800-157108600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:157107200-157108400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:157107200-157108600	Weak transcription	NHEK	skin
12	chr3:157107200-157109000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:157107200-157111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:157107200-157119000	Weak transcription	Fetal Lung	lung
15	chr3:157107400-157108400	Weak transcription	NHDF-Ad	bronchial
16	chr3:157107400-157108600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:157107400-157109000	Weak transcription	Osteobl	bone
18	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:157107800-157108600	Weak transcription	NHLF	lung
20	chr3:157107800-157123000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:157108000-157108400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:157108000-157115000	Weak transcription	HUVEC	blood vessel

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