Variant report

Variant	rs73020298
Chromosome Location	chr3:157135315-157135316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56851214	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56982459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57459645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012193	1.00[AMR][1000 genomes]
rs73016274	1.00[AMR][1000 genomes]
rs73018262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018267	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157119000-157142800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157120000-157142600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:157120200-157135800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:157124400-157135800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:157126600-157135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:157127000-157141800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:157128200-157138600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:157134200-157136200	Enhancers	HSMM	muscle
10	chr3:157134200-157136200	Enhancers	NHDF-Ad	bronchial
11	chr3:157134400-157136200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:157134400-157136400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:157134800-157136000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157134800-157136200	Enhancers	NHEK	skin
15	chr3:157134800-157136200	Enhancers	NHLF	lung
16	chr3:157134800-157136200	Enhancers	Osteobl	bone
17	chr3:157134800-157136400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:157134800-157136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:157135000-157135400	Enhancers	HSMMtube	muscle
20	chr3:157135000-157136000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:157135000-157136000	Enhancers	Spleen	Spleen
22	chr3:157135000-157136000	Enhancers	Hela-S3	cervix
23	chr3:157135000-157136000	Flanking Active TSS	HUVEC	blood vessel
24	chr3:157135000-157136200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:157135000-157136200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:157135000-157136200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:157135000-157136200	Enhancers	NH-A	brain
28	chr3:157135000-157136400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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