Variant report

Variant	rs56851214
Chromosome Location	chr3:157108750-157108751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56982459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57459645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012170	1.00[AMR][1000 genomes]
rs73012193	1.00[AMR][1000 genomes]
rs73016274	1.00[AMR][1000 genomes]
rs73018262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020302	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
2	chr3:157105200-157109200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:157107200-157109000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:157107200-157111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:157107200-157119000	Weak transcription	Fetal Lung	lung
6	chr3:157107400-157109000	Weak transcription	Osteobl	bone
7	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157107800-157123000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:157108000-157115000	Weak transcription	HUVEC	blood vessel
10	chr3:157108400-157109000	ZNF genes & repeats	Aorta	Aorta
11	chr3:157108400-157109200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:157108400-157109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157108400-157109400	Enhancers	NHDF-Ad	bronchial
14	chr3:157108600-157108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:157108600-157109000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:157108600-157109000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:157108600-157109000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:157108600-157109000	ZNF genes & repeats	Lung	lung
19	chr3:157108600-157109000	ZNF genes & repeats	Ovary	ovary
20	chr3:157108600-157109000	Enhancers	NHEK	skin
21	chr3:157108600-157109200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:157108600-157109200	Enhancers	NHLF	lung
23	chr3:157108600-157109400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:157108600-157109400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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