Variant report

Variant	rs73012193
Chromosome Location	chr3:156927033-156927034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34222384	1.00[AMR][1000 genomes]
rs56851214	1.00[AMR][1000 genomes]
rs56982459	1.00[AMR][1000 genomes]
rs57459645	1.00[AMR][1000 genomes]
rs73012170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018262	1.00[AMR][1000 genomes]
rs73018267	1.00[AMR][1000 genomes]
rs73018269	1.00[AMR][1000 genomes]
rs73020273	1.00[AMR][1000 genomes]
rs73020298	1.00[AMR][1000 genomes]
rs73020302	1.00[AMR][1000 genomes]
rs73028043	1.00[AMR][1000 genomes]
rs73029547	1.00[AMR][1000 genomes]
rs7624732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156919400-156929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:156919600-156928800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:156920200-156929600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:156923000-156927400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156923400-156927400	Weak transcription	Fetal Stomach	stomach
6	chr3:156923400-156928600	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:156923800-156928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156924400-156934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:156925000-156929200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:156925600-156928000	Weak transcription	Pancreas	Pancrea
11	chr3:156926200-156928600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:156926600-156927400	Enhancers	HepG2	liver
13	chr3:156926600-156928800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:156926600-156929000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:156926800-156927200	Enhancers	Liver	Liver
16	chr3:156926800-156927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:156926800-156928000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:156927000-156927600	Strong transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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