Variant report

Variant	rs34222384
Chromosome Location	chr3:156759682-156759683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10804775	0.95[ASN][1000 genomes]
rs10804776	0.95[ASN][1000 genomes]
rs10936044	0.89[ASN][1000 genomes]
rs10936046	0.90[ASN][1000 genomes]
rs10936047	0.95[ASN][1000 genomes]
rs10936049	0.95[ASN][1000 genomes]
rs10936050	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10936051	0.95[ASN][1000 genomes]
rs10936052	0.95[ASN][1000 genomes]
rs10936053	0.95[ASN][1000 genomes]
rs11710103	0.95[ASN][1000 genomes]
rs11714269	0.95[ASN][1000 genomes]
rs11927587	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11929637	0.95[ASN][1000 genomes]
rs12491332	0.95[ASN][1000 genomes]
rs12494440	0.92[ASN][1000 genomes]
rs12629618	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12629679	1.00[ASN][1000 genomes]
rs12629809	0.95[ASN][1000 genomes]
rs16826962	1.00[AMR][1000 genomes]
rs1871967	0.95[ASN][1000 genomes]
rs2321458	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34435170	1.00[ASN][1000 genomes]
rs4680325	0.92[ASN][1000 genomes]
rs4680327	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73012170	1.00[AMR][1000 genomes]
rs73012193	1.00[AMR][1000 genomes]
rs73029547	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7635876	0.87[ASN][1000 genomes]
rs9822976	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156751400-156761200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:156758400-156760400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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