Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156694570..156696548-chr3:156699950..156701587,2	K562	blood:

Variant related genes	Relation type
ENSG00000241879	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10804775	0.92[ASN][1000 genomes]
rs10804776	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10936044	1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10936046	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10936047	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10936049	0.92[ASN][1000 genomes]
rs10936050	0.92[ASN][1000 genomes]
rs10936051	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10936052	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10936053	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11710103	0.92[ASN][1000 genomes]
rs11714269	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11927587	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11929637	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12491332	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12494440	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12629618	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12629679	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs12629809	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1871967	0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2321458	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs34222384	0.87[ASN][1000 genomes]
rs34435170	0.87[ASN][1000 genomes]
rs4680325	0.89[ASN][1000 genomes]
rs4680327	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73029547	0.82[ASN][1000 genomes]
rs9822976	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156698200-156702200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156698400-156704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:156698800-156701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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