Variant report
| Variant | rs12629679 |
|---|---|
| Chromosome Location | chr3:156759371-156759372 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10804775 | 0.95[ASN][1000 genomes] |
| rs10804776 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10936044 | 1.00[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs10936046 | 0.90[ASN][1000 genomes] |
| rs10936047 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10936049 | 0.95[ASN][1000 genomes] |
| rs10936050 | 0.95[ASN][1000 genomes] |
| rs10936051 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10936052 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10936053 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11710103 | 0.95[ASN][1000 genomes] |
| rs11714269 | 0.95[ASN][1000 genomes] |
| rs11927587 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11929637 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12491332 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12494440 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12629618 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12629809 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1871967 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2321458 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs34222384 | 1.00[ASN][1000 genomes] |
| rs34435170 | 1.00[ASN][1000 genomes] |
| rs4680325 | 0.92[ASN][1000 genomes] |
| rs4680327 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs73029547 | 0.95[ASN][1000 genomes] |
| rs7635876 | 0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9822976 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349885 | chr3:156685409-156878910 | Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 141 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156751400-156761200 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr3:156758400-156760400 | Enhancers | Fetal Brain Male | brain |
