Variant report

Variant	rs73021122
Chromosome Location	chr3:150927742-150927743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150886462..150889127-chr3:150925386..150928089,2	MCF-7	breast:
2	chr3:150910511..150913182-chr3:150926797..150928825,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12631155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12633262	0.80[ASN][1000 genomes]
rs12638293	0.90[ASN][1000 genomes]
rs16863248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16863250	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2060080	0.95[ASN][1000 genomes]
rs2870413	0.92[AFR][1000 genomes]
rs2870414	0.92[AFR][1000 genomes]
rs2870415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3773614	0.92[AFR][1000 genomes]
rs3773618	0.95[ASN][1000 genomes]
rs3821666	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3960212	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41526246	0.83[AMR][1000 genomes]
rs60816259	0.83[AMR][1000 genomes]
rs6440723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6440725	0.83[AMR][1000 genomes]
rs66725169	0.92[AFR][1000 genomes]
rs6767615	0.95[ASN][1000 genomes]
rs67740545	0.92[AFR][1000 genomes]
rs6776934	0.83[AMR][1000 genomes]
rs6777211	0.83[AMR][1000 genomes]
rs6790244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6790349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73019085	0.83[AFR][1000 genomes]
rs73019093	0.83[AMR][1000 genomes]
rs73019099	0.83[AMR][1000 genomes]
rs73021108	0.83[AMR][1000 genomes]
rs73021116	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73021129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7653225	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:150908800-150933200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:150911800-150928600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:150917000-150931600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:150919800-150933400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:150921400-150929200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:150923000-150928400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:150923200-150929200	Enhancers	Primary T cells from cord blood	blood
10	chr3:150923600-150928600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:150923800-150928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:150923800-150928400	Weak transcription	Brain Germinal Matrix	brain
13	chr3:150923800-150928600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:150923800-150928600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:150925400-150928600	Enhancers	Fetal Intestine Large	intestine
16	chr3:150925600-150928600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:150925800-150928000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:150925800-150928800	Weak transcription	Brain Anterior Caudate	brain
19	chr3:150926400-150928600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr3:150926400-150929200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:150926600-150928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:150926600-150928600	Enhancers	Fetal Intestine Small	intestine
23	chr3:150926600-150929000	Enhancers	Fetal Thymus	thymus
24	chr3:150926800-150927800	Weak transcription	Stomach Mucosa	stomach
25	chr3:150926800-150928000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:150926800-150929000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr3:150927000-150928000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:150927000-150928000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:150927000-150928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:150927200-150928000	Enhancers	NHEK	skin
31	chr3:150927200-150929600	Enhancers	Primary hematopoietic stem cells	blood
32	chr3:150927400-150928600	Enhancers	HepG2	liver
33	chr3:150927400-150928800	Enhancers	Thymus	Thymus
34	chr3:150927600-150927800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr3:150927600-150927800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:150927600-150927800	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr3:150927600-150928600	Enhancers	Liver	Liver
38	chr3:150927600-150929000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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