Variant report

Variant	rs67740545
Chromosome Location	chr3:150918320-150918321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10513385	0.82[AFR][1000 genomes]
rs10513386	0.82[AFR][1000 genomes]
rs12631155	0.96[AFR][1000 genomes]
rs12632494	0.87[ASN][1000 genomes]
rs12636173	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1431494	0.82[AFR][1000 genomes]
rs1431495	0.82[AFR][1000 genomes]
rs16863223	0.82[AFR][1000 genomes]
rs16863229	0.82[AFR][1000 genomes]
rs16863248	0.96[AFR][1000 genomes]
rs16863250	0.92[AFR][1000 genomes]
rs2870413	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2870414	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2870415	0.96[AFR][1000 genomes]
rs34478148	0.93[ASN][1000 genomes]
rs3732755	0.82[AFR][1000 genomes]
rs3773614	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3773616	0.94[EUR][1000 genomes]
rs3821666	0.92[AFR][1000 genomes]
rs3960212	0.90[AFR][1000 genomes]
rs4330297	0.82[AFR][1000 genomes]
rs56368701	0.94[EUR][1000 genomes]
rs6440723	0.96[AFR][1000 genomes]
rs66725169	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6790244	0.93[AFR][1000 genomes]
rs6790349	0.96[AFR][1000 genomes]
rs73018614	0.82[AFR][1000 genomes]
rs73018621	0.82[AFR][1000 genomes]
rs73018622	0.82[AFR][1000 genomes]
rs73018640	0.83[AFR][1000 genomes]
rs73018641	0.83[AFR][1000 genomes]
rs73019085	0.88[AFR][1000 genomes]
rs73019091	0.82[AFR][1000 genomes]
rs73021116	0.93[AFR][1000 genomes]
rs73021122	0.92[AFR][1000 genomes]
rs73021129	0.96[AFR][1000 genomes]
rs7650959	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:150908800-150933200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:150909000-150918800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:150911600-150918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:150911800-150928600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:150915400-150920800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:150915800-150918600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:150916200-150918800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
11	chr3:150916400-150919000	Enhancers	HepG2	liver
12	chr3:150916800-150919000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:150917000-150918400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr3:150917000-150918800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:150917000-150919200	Weak transcription	Liver	Liver
16	chr3:150917000-150919200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:150917000-150931600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:150917200-150920800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:150917400-150918800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:150917400-150919600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:150917600-150918400	Weak transcription	Fetal Lung	lung
22	chr3:150917600-150918800	Enhancers	Fetal Thymus	thymus
23	chr3:150917600-150919000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:150917800-150918600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:150917800-150918800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr3:150917800-150920200	Weak transcription	Dnd41	blood
27	chr3:150917800-150920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:150918000-150918400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:150918000-150918400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr3:150918000-150919600	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr3:150918000-150919800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr3:150918000-150920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:150918000-150924800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:150918200-150918400	Enhancers	Thymus	Thymus
35	chr3:150918200-150921200	Active TSS	Primary T cells fromperipheralblood	blood
36	chr3:150918200-150921400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:150918200-150921400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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