Variant report

Variant	rs3773616
Chromosome Location	chr3:150918008-150918009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12636173	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13075645	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13075882	0.95[ASN][1000 genomes]
rs13088484	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13090838	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2870413	0.94[EUR][1000 genomes]
rs34157543	0.80[ASN][1000 genomes]
rs34378815	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34856800	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35303380	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35922167	1.00[AFR][1000 genomes]
rs36066123	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3773619	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs56368701	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67740545	0.94[EUR][1000 genomes]
rs71306539	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs71306540	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:150896600-150918200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:150908800-150933200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:150909000-150918800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:150911600-150918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:150911800-150928600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:150915400-150920800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:150915800-150918600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:150916200-150918800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
12	chr3:150916400-150919000	Enhancers	HepG2	liver
13	chr3:150916800-150919000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:150917000-150918400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:150917000-150918800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:150917000-150919200	Weak transcription	Liver	Liver
17	chr3:150917000-150919200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:150917000-150931600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:150917200-150918200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:150917200-150920800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:150917400-150918800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:150917400-150919600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:150917600-150918200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:150917600-150918400	Weak transcription	Fetal Lung	lung
25	chr3:150917600-150918800	Enhancers	Fetal Thymus	thymus
26	chr3:150917600-150919000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:150917800-150918200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr3:150917800-150918600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:150917800-150918800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr3:150917800-150920200	Weak transcription	Dnd41	blood
31	chr3:150917800-150920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:150918000-150918200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:150918000-150918200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr3:150918000-150918200	Flanking Active TSS	Thymus	Thymus
35	chr3:150918000-150918400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr3:150918000-150918400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr3:150918000-150919600	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr3:150918000-150919800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr3:150918000-150920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:150918000-150924800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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