Variant report

Variant	rs35303380
Chromosome Location	chr3:150863963-150863964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150803713..150804925-chr3:150863548..150864359,3	MCF-7	breast:
2	chr3:150480168..150482744-chr3:150863449..150865397,2	MCF-7	breast:
3	chr3:150784764..150785338-chr3:150863570..150864390,2	MCF-7	breast:
4	chr3:150753077..150754010-chr3:150863858..150864527,2	MCF-7	breast:
5	chr3:150834592..150835523-chr3:150863486..150864448,3	MCF-7	breast:
6	chr3:150784535..150785084-chr3:150863565..150864073,3	K562	blood:
7	chr3:150439130..150439717-chr3:150863762..150864408,2	K562	blood:
8	chr3:150726245..150727142-chr3:150863441..150864471,12	MCF-7	breast:
9	chr3:150803865..150806747-chr3:150863214..150865555,2	MCF-7	breast:
10	chr3:150802905..150803783-chr3:150863612..150864716,6	MCF-7	breast:
11	chr3:150726303..150727160-chr3:150863474..150864399,6	MCF-7	breast:
12	chr3:150726263..150727081-chr3:150863546..150864127,2	K562	blood:
13	chr3:150643163..150644188-chr3:150863256..150864452,7	MCF-7	breast:
14	chr3:150859764..150861987-chr3:150862160..150864120,2	MCF-7	breast:
15	chr3:150784607..150785620-chr3:150863485..150864424,9	MCF-7	breast:
16	chr3:150643602..150644107-chr3:150863509..150864363,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction
ENSG00000181788	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12632494	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13075645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075882	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13090838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2870414	0.86[EUR][1000 genomes]
rs34272131	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34378815	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34478148	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34856800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35922167	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36066123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3773614	0.88[EUR][1000 genomes]
rs3773616	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3773619	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56368701	0.84[ASN][1000 genomes]
rs66725169	0.86[EUR][1000 genomes]
rs71306539	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71306540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:150861200-150865000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:150861400-150872600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150861800-150864000	Weak transcription	Fetal Kidney	kidney
5	chr3:150861800-150872600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:150862000-150872200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:150862200-150864000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150862400-150864200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:150862600-150864200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:150862600-150864200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:150862600-150864400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:150862600-150864400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:150862600-150864400	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:150862800-150865000	Enhancers	Fetal Intestine Small	intestine
15	chr3:150862800-150873000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:150862800-150873600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:150863000-150864200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:150863000-150864400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:150863000-150864800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:150863200-150864200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:150863200-150889000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:150863400-150864200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr3:150863400-150864800	Enhancers	Fetal Intestine Large	intestine
24	chr3:150863600-150864000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr3:150863600-150864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:150863600-150864000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:150863600-150864000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr3:150863600-150864000	Active TSS	Primary B cells from cord blood	blood
29	chr3:150863600-150864000	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr3:150863600-150864000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr3:150863600-150864000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:150863600-150864000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr3:150863600-150864000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:150863600-150864000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr3:150863600-150864000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:150863600-150864000	Enhancers	Adipose Nuclei	Adipose
37	chr3:150863600-150864000	Bivalent Enhancer	Osteobl	bone
38	chr3:150863600-150864200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:150863600-150864200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
40	chr3:150863600-150864200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:150863600-150864200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:150863600-150864200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr3:150863600-150864200	Enhancers	Liver	Liver
44	chr3:150863600-150864200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr3:150863600-150864200	Enhancers	Fetal Lung	lung
46	chr3:150863600-150864200	Enhancers	Fetal Muscle Trunk	muscle
47	chr3:150863600-150864200	Enhancers	Gastric	stomach
48	chr3:150863600-150864200	Enhancers	Left Ventricle	heart
49	chr3:150863600-150864200	Enhancers	Lung	lung
50	chr3:150863600-150864400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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