Variant report

Variant	rs34856800
Chromosome Location	chr3:150895382-150895383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150894791..150897872-chr3:150901090..150904016,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12632494	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13075645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075882	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13090838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2870414	0.95[EUR][1000 genomes]
rs34272131	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34378815	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34478148	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35303380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35922167	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36066123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773614	0.93[EUR][1000 genomes]
rs3773616	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3773617	0.83[EUR][1000 genomes]
rs3773619	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56368701	0.95[ASN][1000 genomes]
rs66725169	0.95[EUR][1000 genomes]
rs71306539	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71306540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:150874200-150896000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:150874800-150900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
7	chr3:150880400-150900200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:150880800-150900400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:150883800-150896000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:150884200-150906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:150888600-150896000	Weak transcription	Stomach Mucosa	stomach
12	chr3:150888800-150896000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:150889000-150904000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:150889200-150908200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:150889200-150914800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:150889400-150896200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:150889400-150903600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:150889600-150904000	Weak transcription	Brain Anterior Caudate	brain
19	chr3:150889600-150913800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:150889800-150896000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:150890000-150897400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:150891000-150900200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:150892400-150904200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:150892800-150898000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:150893200-150896200	Enhancers	HepG2	liver
27	chr3:150893600-150898600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:150893800-150897600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:150894000-150896200	Weak transcription	Fetal Intestine Large	intestine
30	chr3:150894000-150896200	Weak transcription	Fetal Intestine Small	intestine
31	chr3:150894000-150904200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr3:150894600-150896800	Weak transcription	Small Intestine	intestine
33	chr3:150895200-150900200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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