Variant report

Variant	rs73021201
Chromosome Location	chr3:150959237-150959238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150952073..150954804-chr3:150956645..150959268,2	K562	blood:

Variant related genes	Relation type
ENSG00000266798	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10212582	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11711104	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11714714	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13317873	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920395	0.96[ASN][1000 genomes]
rs1920396	0.84[AMR][1000 genomes]
rs1980143	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904430	0.81[AMR][1000 genomes]
rs3846072	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4269062	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4679772	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679783	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680254	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680257	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680260	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680273	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62283021	0.81[AMR][1000 genomes]
rs6440730	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6768130	0.81[AMR][1000 genomes]
rs6782715	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6809692	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7617677	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7621113	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7621183	0.85[AMR][1000 genomes]
rs7621211	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7623448	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7653603	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9757688	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9815520	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9829753	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9835328	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9853297	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9870740	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9880339	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:150950000-150966400	Weak transcription	Primary B cells from cord blood	blood
5	chr3:150952800-150978400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:150956000-150962200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:150957800-150959600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:150958000-150966800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:150958200-150959400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:150958400-150959600	Strong transcription	Primary hematopoietic stem cells	blood
12	chr3:150959000-150959400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:150959000-150959600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr3:150959200-150959400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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