Variant report

Variant	rs62283021
Chromosome Location	chr3:151003880-151003881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1048408	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10513392	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714714	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717955	0.86[ASN][1000 genomes]
rs11719936	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12330831	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488267	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12494865	0.87[ASN][1000 genomes]
rs1317465	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1352886	0.85[ASN][1000 genomes]
rs1472122	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1565574	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16863323	0.87[ASN][1000 genomes]
rs16863334	0.87[ASN][1000 genomes]
rs16863336	0.85[ASN][1000 genomes]
rs1844924	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1882014	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1882015	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1882017	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1920396	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28371419	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28497341	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2904430	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4076581	0.81[ASN][1000 genomes]
rs4475010	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4679783	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56105302	0.87[ASN][1000 genomes]
rs56367650	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58334126	0.90[ASN][1000 genomes]
rs6765215	0.88[ASN][1000 genomes]
rs6768130	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6782313	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6807308	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73021201	0.81[AMR][1000 genomes]
rs7617677	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621113	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621183	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621211	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7623448	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7653603	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8180086	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9757688	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9810067	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9827619	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9828553	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9829753	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870740	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9875152	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150999400-151011200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:151002000-151010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:151002000-151012000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:151002200-151004000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:151002200-151009600	Weak transcription	HMEC	breast
8	chr3:151002200-151010800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:151002400-151018000	Weak transcription	NHLF	lung
10	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:151002800-151007800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:151002800-151010800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:151002800-151011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:151003600-151004000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:151003800-151004400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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