Variant report

Variant	rs58334126
Chromosome Location	chr3:151014271-151014272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151013951..151016026-chr3:151038369..151040952,2	MCF-7	breast:
2	chr3:151005525..151007235-chr3:151013467..151015003,2	MCF-7	breast:
3	chr3:151013184..151015742-chr3:151046141..151048093,2	MCF-7	breast:
4	chr3:151011307..151016157-chr3:151019117..151025599,7	MCF-7	breast:
5	chr3:151006710..151009411-chr3:151013071..151015478,2	K562	blood:

Variant related genes	Relation type
ENSG00000181631	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1048408	0.98[ASN][1000 genomes]
rs10513392	0.99[ASN][1000 genomes]
rs11714714	0.88[ASN][1000 genomes]
rs11717955	0.87[EUR][1000 genomes]
rs11719936	0.96[ASN][1000 genomes]
rs12330831	0.89[ASN][1000 genomes]
rs12488267	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12494865	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1317465	0.88[ASN][1000 genomes]
rs1352886	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1472122	0.95[ASN][1000 genomes]
rs1565574	0.91[ASN][1000 genomes]
rs16863323	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16863334	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16863336	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1844924	0.98[ASN][1000 genomes]
rs1882014	0.88[ASN][1000 genomes]
rs1882015	0.89[ASN][1000 genomes]
rs1882017	0.89[ASN][1000 genomes]
rs1920396	0.89[ASN][1000 genomes]
rs28371419	0.96[ASN][1000 genomes]
rs28497341	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2904430	0.89[ASN][1000 genomes]
rs4076581	0.91[EUR][1000 genomes]
rs4475010	0.85[ASN][1000 genomes]
rs4679783	0.88[ASN][1000 genomes]
rs56105302	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56367650	0.90[ASN][1000 genomes]
rs62283021	0.90[ASN][1000 genomes]
rs6765215	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6768130	0.90[ASN][1000 genomes]
rs6782313	0.88[ASN][1000 genomes]
rs6807308	0.88[ASN][1000 genomes]
rs7617677	0.90[ASN][1000 genomes]
rs7621113	0.89[ASN][1000 genomes]
rs7621183	0.89[ASN][1000 genomes]
rs7621211	0.89[ASN][1000 genomes]
rs7623448	0.89[ASN][1000 genomes]
rs7653603	0.88[ASN][1000 genomes]
rs8180086	0.94[ASN][1000 genomes]
rs9757688	0.88[ASN][1000 genomes]
rs9810067	0.90[ASN][1000 genomes]
rs9827619	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9828553	0.96[ASN][1000 genomes]
rs9829753	0.89[ASN][1000 genomes]
rs9870740	0.84[ASN][1000 genomes]
rs9875152	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:151002400-151018000	Weak transcription	NHLF	lung
3	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:151009600-151018200	Strong transcription	HMEC	breast
5	chr3:151009800-151016000	Weak transcription	Aorta	Aorta
6	chr3:151010200-151022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:151010400-151019000	Strong transcription	NHEK	skin
8	chr3:151010600-151018800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:151010800-151018200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:151011200-151018800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:151011400-151021800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:151011800-151021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:151012400-151021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:151012800-151021600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:151013200-151018000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:151013800-151014400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:151014000-151014400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:151014000-151014400	Genic enhancers	Esophagus	oesophagus
19	chr3:151014000-151014600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:151014200-151014400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:151014200-151016200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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