Variant report

Variant	rs9875152
Chromosome Location	chr3:151063869-151063870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:
2	chr3:151039875..151042217-chr3:151061873..151064664,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1048408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10513392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11714714	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11717955	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs11719936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12330831	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12488267	0.88[ASN][1000 genomes]
rs12494865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1317465	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1352886	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs1472122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565574	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16863323	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[ASN][1000 genomes]
rs16863334	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16863336	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs1844924	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1882014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1882015	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1882016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1882017	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1920396	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1980143	0.90[CEU][hapmap]
rs28371419	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28497341	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2904430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4076581	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4475010	0.82[ASN][1000 genomes]
rs4679772	0.90[CEU][hapmap]
rs4679783	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680254	0.82[CEU][hapmap]
rs4680257	0.90[CEU][hapmap]
rs4680260	0.82[CEU][hapmap]
rs56105302	0.99[ASN][1000 genomes]
rs56367650	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58334126	0.94[ASN][1000 genomes]
rs62283021	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6765215	0.97[ASN][1000 genomes]
rs6768130	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6782313	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6807308	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6809692	0.88[CEU][hapmap]
rs7617677	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7621113	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7621183	0.84[ASN][1000 genomes]
rs7621211	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7623448	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7653603	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8180086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9757688	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9810067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9815520	0.90[CEU][hapmap]
rs9827619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9829753	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9870740	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151059400-151064200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:151063200-151066000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:151063400-151064000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:151063400-151064000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:151063600-151064000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:151063600-151064000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:151063600-151064000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:151063600-151064000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:151063600-151064000	Active TSS	Adipose Nuclei	Adipose
11	chr3:151063600-151064000	Active TSS	Aorta	Aorta
12	chr3:151063600-151064000	Active TSS	Brain Hippocampus Middle	brain
13	chr3:151063600-151064000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr3:151063600-151064000	Active TSS	Rectal Smooth Muscle	rectum
15	chr3:151063600-151064000	Active TSS	Stomach Smooth Muscle	stomach
16	chr3:151063600-151064000	Active TSS	NHDF-Ad	bronchial
17	chr3:151063600-151064200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr3:151063600-151064200	Active TSS	Brain Anterior Caudate	brain
19	chr3:151063600-151064200	Active TSS	Colon Smooth Muscle	Colon
20	chr3:151063600-151064200	Active TSS	Right Atrium	heart
21	chr3:151063600-151064400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:151063600-151064400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:151063600-151064400	Active TSS	Fetal Lung	lung
24	chr3:151063600-151064400	Enhancers	NHLF	lung
25	chr3:151063600-151064600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr3:151063600-151064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:151063600-151065000	Active TSS	Primary B cells from cord blood	blood
28	chr3:151063800-151064000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr3:151063800-151064200	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr3:151063800-151064200	Enhancers	Brain Cingulate Gyrus	brain
31	chr3:151063800-151065800	Weak transcription	Brain Angular Gyrus	brain
32	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine

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