Variant report

Variant	rs73021739
Chromosome Location	chr2:168246321-168246322
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60233460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61107173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv431790	chr2:168217873-168273530	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168237600-168246400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:168238000-168247800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:168242200-168255200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:168243400-168246800	Enhancers	Fetal Brain Male	brain
5	chr2:168244600-168246400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:168245000-168247800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:168245200-168246800	Weak transcription	Fetal Brain Female	brain
8	chr2:168245400-168252400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:168245800-168251200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:168245800-168251600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:168246000-168246600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:168246000-168246800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:168246000-168247600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:168246200-168246800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:168246200-168259000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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