Variant report

Variant	rs73023834
Chromosome Location	chr2:168263646-168263647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60233460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61107173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021734	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021739	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021740	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021745	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021751	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021767	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021770	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv431790	chr2:168217873-168273530	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2760556	chr2:168259049-168283244	Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168261400-168266000	Weak transcription	Fetal Brain Male	brain
2	chr2:168261800-168266800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:168262600-168264000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:168263200-168263800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:168263200-168263800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:168263200-168263800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:168263200-168264000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:168263400-168265200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:168263400-168271200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:168263600-168264200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:168263600-168264200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:168263600-168265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:168263600-168278200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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