Variant report

Variant	rs73023544
Chromosome Location	chr1:173377791-173377792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173224308..173225029-chr1:173377753..173378776,4	MCF-7	breast:
2	chr1:173376973..173378598-chr1:173383369..173385088,2	MCF-7	breast:
3	chr1:172711457..172712657-chr1:173377723..173378540,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6667110	0.94[AFR][1000 genomes]
rs6690885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
2	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
4	chr1:173362600-173381200	Weak transcription	Ovary	ovary
5	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
7	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
9	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
10	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:173367800-173379600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:173370600-173378600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:173370800-173379400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:173370800-173382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:173370800-173389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:173370800-173389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:173370800-173389400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:173370800-173389400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:173370800-173389400	Weak transcription	Aorta	Aorta
20	chr1:173371400-173378200	Weak transcription	Primary T cells from cord blood	blood
21	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
22	chr1:173374800-173379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:173374800-173382600	Weak transcription	Fetal Intestine Small	intestine
24	chr1:173375200-173398600	Weak transcription	Esophagus	oesophagus
25	chr1:173375400-173378200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:173375400-173378200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:173375400-173378200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:173375400-173378200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:173375400-173378200	Weak transcription	NH-A	brain
30	chr1:173375400-173378200	Weak transcription	Osteobl	bone
31	chr1:173375400-173378800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:173375400-173378800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:173375400-173378800	Weak transcription	HSMMtube	muscle
34	chr1:173375400-173379000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:173375400-173379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:173375400-173381400	Weak transcription	NHDF-Ad	bronchial
37	chr1:173375400-173381400	Weak transcription	NHLF	lung
38	chr1:173375600-173378200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:173376000-173379200	Enhancers	Primary B cells from cord blood	blood
40	chr1:173376000-173379200	Enhancers	Dnd41	blood
41	chr1:173376000-173389400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:173376200-173377800	Weak transcription	HSMM	muscle
43	chr1:173376200-173378800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:173376200-173379600	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:173376200-173379600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr1:173376200-173380000	Weak transcription	Right Atrium	heart
47	chr1:173376200-173381200	Weak transcription	Hela-S3	cervix
48	chr1:173376200-173383000	Weak transcription	K562	blood
49	chr1:173376200-173389400	Weak transcription	Brain Anterior Caudate	brain
50	chr1:173376200-173429000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links