Variant report

Variant	rs6667110
Chromosome Location	chr1:173379603-173379604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173378501..173381323-chr1:173794194..173795815,2	K562	blood:
2	chr1:173378386..173381395-chr1:173383017..173386939,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs35224644	1.00[AMR][1000 genomes]
rs35679908	1.00[AMR][1000 genomes]
rs35749242	1.00[AMR][1000 genomes]
rs35899698	1.00[AMR][1000 genomes]
rs56868943	1.00[AMR][1000 genomes]
rs57832781	1.00[AMR][1000 genomes]
rs58307514	1.00[AMR][1000 genomes]
rs58425101	1.00[AMR][1000 genomes]
rs61075186	1.00[AMR][1000 genomes]
rs6690885	0.94[AFR][1000 genomes]
rs6691086	1.00[AMR][1000 genomes]
rs73023544	0.94[AFR][1000 genomes]
rs73023584	1.00[AMR][1000 genomes]
rs73025454	1.00[AMR][1000 genomes]
rs73025457	1.00[AMR][1000 genomes]
rs73025474	1.00[AMR][1000 genomes]
rs73025495	1.00[AMR][1000 genomes]
rs73027303	1.00[AMR][1000 genomes]
rs73027364	1.00[AMR][1000 genomes]
rs73027398	1.00[AMR][1000 genomes]
rs73029321	1.00[AMR][1000 genomes]
rs73041128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
2	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
4	chr1:173362600-173381200	Weak transcription	Ovary	ovary
5	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
7	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
8	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
9	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:173370800-173382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:173370800-173389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:173370800-173389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:173370800-173389400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:173370800-173389400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:173370800-173389400	Weak transcription	Aorta	Aorta
16	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
17	chr1:173374800-173379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:173374800-173382600	Weak transcription	Fetal Intestine Small	intestine
19	chr1:173375200-173398600	Weak transcription	Esophagus	oesophagus
20	chr1:173375400-173379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:173375400-173381400	Weak transcription	NHDF-Ad	bronchial
22	chr1:173375400-173381400	Weak transcription	NHLF	lung
23	chr1:173376000-173389400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:173376200-173380000	Weak transcription	Right Atrium	heart
25	chr1:173376200-173381200	Weak transcription	Hela-S3	cervix
26	chr1:173376200-173383000	Weak transcription	K562	blood
27	chr1:173376200-173389400	Weak transcription	Brain Anterior Caudate	brain
28	chr1:173376200-173429000	Weak transcription	Gastric	stomach
29	chr1:173376400-173379800	Weak transcription	Adipose Nuclei	Adipose
30	chr1:173376400-173379800	Weak transcription	Psoas Muscle	Psoas
31	chr1:173376400-173379800	Weak transcription	Thymus	Thymus
32	chr1:173376400-173380600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr1:173376400-173382600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:173376400-173382800	Weak transcription	Fetal Thymus	thymus
35	chr1:173376400-173384000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:173376400-173384600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:173376400-173385000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:173376400-173385200	Weak transcription	Lung	lung
39	chr1:173376400-173389000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:173376400-173389200	Weak transcription	Liver	Liver
41	chr1:173376400-173389200	Weak transcription	A549	lung
42	chr1:173376400-173389400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:173376400-173389400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:173376400-173389400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:173376400-173400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr1:173376600-173379800	Weak transcription	Spleen	Spleen
47	chr1:173376600-173389200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:173376600-173389400	Weak transcription	Colonic Mucosa	Colon
49	chr1:173376600-173389600	Enhancers	Primary B cells from peripheral blood	blood
50	chr1:173376600-173392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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