The 2.0 version of rSNPBase

Variant report

Variant rs73025454
Chromosome Location chr1:173441277-173441278
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173423800-173442400 Weak transcription NH-A brain
2 chr1:173425200-173442400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr1:173430400-173442400 Weak transcription Gastric stomach
4 chr1:173430400-173442800 Weak transcription Pancreas Pancrea
5 chr1:173430400-173444400 Weak transcription Right Ventricle heart
6 chr1:173430600-173442600 Weak transcription Aorta Aorta
7 chr1:173430600-173443200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:173430600-173444400 Weak transcription Rectal Smooth Muscle rectum
9 chr1:173430800-173445000 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:173431000-173442400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:173431000-173442400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:173431000-173442400 Weak transcription Hela-S3 cervix
13 chr1:173431000-173442600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:173431000-173442600 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:173431000-173444400 Weak transcription Left Ventricle heart
16 chr1:173431200-173442400 Weak transcription Stomach Smooth Muscle stomach
17 chr1:173431200-173442800 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:173431600-173442400 Weak transcription Liver Liver
19 chr1:173432800-173442600 Weak transcription Fetal Heart heart
20 chr1:173433000-173442400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:173433200-173444200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:173433400-173442800 Weak transcription Primary T cells fromperipheralblood blood
23 chr1:173435600-173442800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:173435800-173442000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:173436400-173442800 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr1:173437000-173442400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:173437200-173442200 Weak transcription Osteobl bone
28 chr1:173438000-173442600 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
29 chr1:173438200-173445000 Weak transcription Primary B cells from cord blood blood
30 chr1:173438600-173441600 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
31 chr1:173438800-173442400 Weak transcription HSMMtube muscle
32 chr1:173439000-173442800 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:173439200-173442800 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
34 chr1:173439400-173441800 ZNF genes & repeats iPS-15b Cell Line embryonic stem cell
35 chr1:173439600-173442400 Weak transcription NHDF-Ad bronchial
36 chr1:173439800-173441800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:173440000-173442400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:173440000-173443200 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:173440000-173444400 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr1:173440200-173441800 ZNF genes & repeats H1 Cell Line embryonic stem cell
41 chr1:173440200-173442200 Weak transcription NHLF lung
42 chr1:173440200-173442400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:173440200-173442400 Weak transcription Brain Angular Gyrus brain
44 chr1:173440200-173442400 Weak transcription Brain Anterior Caudate brain
45 chr1:173440200-173442600 Weak transcription Brain Hippocampus Middle brain
46 chr1:173440200-173442800 Strong transcription Primary T cells from cord blood blood
47 chr1:173440200-173443000 Weak transcription Primary T regulatory cells fromperipheralblood blood
48 chr1:173440200-173443600 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr1:173440200-173444000 Weak transcription Fetal Muscle Leg muscle
50 chr1:173440400-173441400 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015