Variant report

Variant	rs35224644
Chromosome Location	chr1:173454059-173454060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:173454021..173455524-chr1:173471878..173474498,2	K562	blood:
2	chr1:173398971..173403137-chr1:173453478..173457136,4	K562	blood:
3	chr1:173449263..173452210-chr1:173453821..173456391,3	MCF-7	breast:
4	chr1:173452575..173455109-chr1:173835450..173838696,4	MCF-7	breast:
5	chr1:173446558..173448990-chr1:173454032..173456674,3	MCF-7	breast:
6	chr1:173452597..173454697-chr1:173456877..173459634,2	MCF-7	breast:
7	chr1:173450429..173453929-chr1:173454032..173458436,7	MCF-7	breast:
8	chr1:173391693..173394474-chr1:173452509..173454513,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000234741	Chromatin interaction
ENSG00000185278	Chromatin interaction
ENSG00000117592	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16846134	1.00[EUR][1000 genomes]
rs35244306	1.00[EUR][1000 genomes]
rs35679908	1.00[AMR][1000 genomes]
rs35749242	1.00[AMR][1000 genomes]
rs35899698	1.00[AMR][1000 genomes]
rs56868943	1.00[AMR][1000 genomes]
rs57832781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58307514	1.00[AMR][1000 genomes]
rs58425101	1.00[AMR][1000 genomes]
rs61075186	1.00[AMR][1000 genomes]
rs6667110	1.00[AMR][1000 genomes]
rs6691086	1.00[AMR][1000 genomes]
rs73023584	1.00[AMR][1000 genomes]
rs73025454	1.00[AMR][1000 genomes]
rs73025457	1.00[AMR][1000 genomes]
rs73025473	1.00[EUR][1000 genomes]
rs73025474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025495	1.00[AMR][1000 genomes]
rs73027303	1.00[AMR][1000 genomes]
rs73027364	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027398	1.00[AMR][1000 genomes]
rs73029321	1.00[AMR][1000 genomes]
rs73035116	1.00[AMR][1000 genomes]
rs73041128	1.00[AMR][1000 genomes]
rs7539992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173448000-173477000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:173448600-173459800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr1:173448800-173458200	Strong transcription	Primary B cells from cord blood	blood
4	chr1:173448800-173459400	Weak transcription	Stomach Mucosa	stomach
5	chr1:173448800-173460000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:173449000-173454400	Weak transcription	Small Intestine	intestine
7	chr1:173449000-173458600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173449000-173458800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:173449000-173458800	Strong transcription	Fetal Intestine Large	intestine
10	chr1:173449000-173459400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:173449000-173459400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:173449200-173456400	Strong transcription	Placenta	Placenta
13	chr1:173449200-173456600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:173449200-173457000	Strong transcription	Fetal Kidney	kidney
15	chr1:173449200-173458800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:173449200-173459600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:173449400-173456200	Weak transcription	Fetal Heart	heart
18	chr1:173449400-173457800	Strong transcription	NHDF-Ad	bronchial
19	chr1:173449400-173458000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:173449400-173458600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:173449400-173458800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr1:173449400-173459200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:173449600-173457400	Strong transcription	NHEK	skin
24	chr1:173449600-173458000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:173449600-173458600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr1:173449600-173458600	Strong transcription	HMEC	breast
27	chr1:173449600-173458600	Strong transcription	HUVEC	blood vessel
28	chr1:173449600-173458600	Strong transcription	NH-A	brain
29	chr1:173449600-173458600	Strong transcription	Osteobl	bone
30	chr1:173449600-173458800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:173449600-173458800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:173449600-173458800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:173449600-173458800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr1:173449600-173458800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr1:173449600-173459200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr1:173449600-173459400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr1:173449600-173459400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:173449600-173459400	Strong transcription	HSMM	muscle
39	chr1:173449600-173459600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:173449600-173460000	Strong transcription	A549	lung
41	chr1:173449800-173454400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:173449800-173457800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr1:173449800-173458400	Strong transcription	Hela-S3	cervix
44	chr1:173449800-173458600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:173449800-173458800	Strong transcription	Fetal Thymus	thymus
46	chr1:173449800-173459000	Strong transcription	Fetal Muscle Leg	muscle
47	chr1:173449800-173459200	Strong transcription	Brain Hippocampus Middle	brain
48	chr1:173449800-173459400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr1:173449800-173460000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:173450000-173458400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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