Variant report

Variant	rs73027398
Chromosome Location	chr1:173520097-173520098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr1:173520062-173520264	K562	blood:	n/a	chr1:173520133-173520142 chr1:173520131-173520140 chr1:173520133-173520143 chr1:173520134-173520141

Variant related genes	Relation type
ENSG00000238272	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16846397	1.00[AMR][1000 genomes]
rs35224644	1.00[AMR][1000 genomes]
rs35679908	1.00[AMR][1000 genomes]
rs35749242	1.00[AMR][1000 genomes]
rs35899698	1.00[AMR][1000 genomes]
rs56868943	1.00[AMR][1000 genomes]
rs57832781	1.00[AMR][1000 genomes]
rs58307514	1.00[AMR][1000 genomes]
rs58425101	1.00[AMR][1000 genomes]
rs61075186	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6667110	1.00[AMR][1000 genomes]
rs6691086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023584	1.00[AMR][1000 genomes]
rs73025454	1.00[AMR][1000 genomes]
rs73025457	1.00[AMR][1000 genomes]
rs73025474	1.00[AMR][1000 genomes]
rs73025495	1.00[AMR][1000 genomes]
rs73027303	1.00[AMR][1000 genomes]
rs73027364	1.00[AMR][1000 genomes]
rs73029321	1.00[AMR][1000 genomes]
rs73035116	1.00[AMR][1000 genomes]
rs73035134	1.00[AMR][1000 genomes]
rs73035139	1.00[AMR][1000 genomes]
rs73041128	1.00[AMR][1000 genomes]
rs7519571	1.00[AMR][1000 genomes]
rs7539992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173517200-173523000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:173518200-173523600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:173518400-173522600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:173518400-173523400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:173518600-173522800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr1:173518600-173523000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:173519000-173521200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:173519000-173522800	Enhancers	Primary T cells from cord blood	blood
11	chr1:173519000-173523600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr1:173519200-173520200	Weak transcription	K562	blood
13	chr1:173519200-173521000	Enhancers	Dnd41	blood
14	chr1:173519800-173520200	Weak transcription	HUVEC	blood vessel
15	chr1:173519800-173521800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:173520000-173520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:173520000-173521000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:173520000-173521400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:173520000-173523600	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links