Variant report

Variant	rs6691086
Chromosome Location	chr1:173518438-173518439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16846397	1.00[AMR][1000 genomes]
rs35224644	1.00[AMR][1000 genomes]
rs35679908	1.00[AMR][1000 genomes]
rs35749242	1.00[AMR][1000 genomes]
rs35899698	1.00[AMR][1000 genomes]
rs56868943	1.00[AMR][1000 genomes]
rs57832781	1.00[AMR][1000 genomes]
rs58307514	1.00[AMR][1000 genomes]
rs58425101	1.00[AMR][1000 genomes]
rs61075186	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6667110	1.00[AMR][1000 genomes]
rs73023584	1.00[AMR][1000 genomes]
rs73025454	1.00[AMR][1000 genomes]
rs73025457	1.00[AMR][1000 genomes]
rs73025474	1.00[AMR][1000 genomes]
rs73025495	1.00[AMR][1000 genomes]
rs73027303	1.00[AMR][1000 genomes]
rs73027364	1.00[AMR][1000 genomes]
rs73027398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029321	1.00[AMR][1000 genomes]
rs73035116	1.00[AMR][1000 genomes]
rs73035134	1.00[AMR][1000 genomes]
rs73035139	1.00[AMR][1000 genomes]
rs73041128	1.00[AMR][1000 genomes]
rs7519571	1.00[AMR][1000 genomes]
rs7539992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173516600-173523600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:173517200-173523000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:173517400-173518600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:173517400-173518600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:173518000-173518600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:173518000-173523800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:173518200-173519800	Enhancers	HUVEC	blood vessel
8	chr1:173518200-173523600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:173518400-173519600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:173518400-173522600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:173518400-173523400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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