Variant report

Variant	rs7539992
Chromosome Location	chr1:173641450-173641451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ANKRD45	TF binding region
ENSG00000183831	Chromatin interaction
ENSG00000120334	Chromatin interaction
ENSG00000117593	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1322769	1.00[AMR][1000 genomes]
rs16846397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846483	1.00[AMR][1000 genomes]
rs2227620	1.00[AMR][1000 genomes]
rs35224644	1.00[AMR][1000 genomes]
rs35679908	1.00[AMR][1000 genomes]
rs35749242	1.00[AMR][1000 genomes]
rs35899698	1.00[AMR][1000 genomes]
rs56868943	1.00[AMR][1000 genomes]
rs57006357	1.00[AMR][1000 genomes]
rs57343517	1.00[AMR][1000 genomes]
rs57832781	1.00[AMR][1000 genomes]
rs58425101	1.00[AMR][1000 genomes]
rs58930477	1.00[AMR][1000 genomes]
rs61075186	1.00[AMR][1000 genomes]
rs6691086	1.00[AMR][1000 genomes]
rs73023584	1.00[AMR][1000 genomes]
rs73025454	1.00[AMR][1000 genomes]
rs73025457	1.00[AMR][1000 genomes]
rs73025474	1.00[AMR][1000 genomes]
rs73025495	1.00[AMR][1000 genomes]
rs73027303	1.00[AMR][1000 genomes]
rs73027364	1.00[AMR][1000 genomes]
rs73027398	1.00[AMR][1000 genomes]
rs73029321	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035116	1.00[AMR][1000 genomes]
rs73035134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037076	1.00[AMR][1000 genomes]
rs73037083	1.00[AMR][1000 genomes]
rs73037097	1.00[AMR][1000 genomes]
rs7519571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9726181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173630600-173646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:173639000-173657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:173639800-173645200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:173640600-173642200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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