The 2.0 version of rSNPBase

Variant report

Variant rs2227620
Chromosome Location chr1:173872157-173872158
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173855600-173875400 Weak transcription NH-A brain
2 chr1:173855800-173873000 Weak transcription Fetal Intestine Small intestine
3 chr1:173855800-173880400 Weak transcription Thymus Thymus
4 chr1:173856000-173872600 Weak transcription Fetal Thymus thymus
5 chr1:173856000-173883000 Weak transcription Right Ventricle heart
6 chr1:173856200-173872800 Weak transcription Ovary ovary
7 chr1:173856200-173875400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:173856200-173878400 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:173856200-173880400 Weak transcription Psoas Muscle Psoas
10 chr1:173856400-173873800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:173856400-173876000 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:173856400-173880000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:173856600-173881200 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:173856600-173907200 Weak transcription Brain Germinal Matrix brain
15 chr1:173857000-173883800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:173857400-173880400 Weak transcription Fetal Brain Female brain
17 chr1:173857400-173881800 Weak transcription Brain Hippocampus Middle brain
18 chr1:173857400-173884400 Weak transcription HepG2 liver
19 chr1:173857400-173885800 Weak transcription Fetal Intestine Large intestine
20 chr1:173857400-173902000 Weak transcription HSMMtube muscle
21 chr1:173857600-173872600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr1:173858200-173902800 Weak transcription Left Ventricle heart
23 chr1:173858400-173878600 Weak transcription Fetal Muscle Trunk muscle
24 chr1:173858600-173881400 Weak transcription Primary B cells from cord blood blood
25 chr1:173858600-173886800 Weak transcription Placenta Placenta
26 chr1:173858800-173872200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:173858800-173876000 Weak transcription NHLF lung
28 chr1:173862000-173873400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:173862000-173891600 Weak transcription Stomach Smooth Muscle stomach
30 chr1:173863600-173875800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:173863800-173878800 Weak transcription Aorta Aorta
32 chr1:173864000-173875600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:173864200-173878600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:173864600-173878200 Weak transcription Primary B cells from peripheral blood blood
35 chr1:173864600-173886600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:173865200-173874600 Weak transcription Primary T cells fromperipheralblood blood
37 chr1:173865400-173873200 Weak transcription Primary T cells from cord blood blood
38 chr1:173866600-173878600 Strong transcription Liver Liver
39 chr1:173868400-173873000 Enhancers iPS-15b Cell Line embryonic stem cell
40 chr1:173869000-173872800 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:173869000-173880200 Weak transcription Brain Angular Gyrus brain
42 chr1:173869200-173880200 Weak transcription Brain Substantia Nigra brain
43 chr1:173869800-173877800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:173870000-173880400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr1:173870000-173898000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr1:173870200-173873000 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:173870200-173876600 Weak transcription Primary hematopoietic stem cells blood
48 chr1:173870200-173880600 Weak transcription Adipose Nuclei Adipose
49 chr1:173870400-173887400 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr1:173871200-173873000 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015