The 2.0 version of rSNPBase

Variant report

Variant rs58930477
Chromosome Location chr1:173817064-173817065
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173794400-173832800 Weak transcription Fetal Heart heart
2 chr1:173794600-173820600 Weak transcription NHLF lung
3 chr1:173794600-173821800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:173794600-173821800 Weak transcription Pancreas Pancrea
5 chr1:173794600-173822000 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr1:173794600-173832000 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:173794600-173832000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr1:173794600-173832600 Weak transcription Brain Substantia Nigra brain
9 chr1:173794600-173833800 Weak transcription Stomach Mucosa stomach
10 chr1:173794800-173834000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:173795000-173826200 Weak transcription Psoas Muscle Psoas
12 chr1:173795000-173834600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:173795200-173822400 Weak transcription Rectal Smooth Muscle rectum
14 chr1:173795200-173824600 Weak transcription Gastric stomach
15 chr1:173795400-173817400 Weak transcription Fetal Brain Male brain
16 chr1:173796000-173818000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr1:173796200-173817800 Strong transcription HUES48 Cell Line embryonic stem cell
18 chr1:173797200-173828400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:173799400-173820400 Strong transcription Fetal Intestine Large intestine
20 chr1:173799600-173828800 Strong transcription Primary monocytes fromperipheralblood blood
21 chr1:173801000-173822200 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:173801200-173825000 Weak transcription Brain Angular Gyrus brain
23 chr1:173802200-173817800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:173803000-173826600 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:173804600-173819000 Weak transcription GM12878-XiMat blood
26 chr1:173806800-173822800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr1:173809000-173822000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:173809200-173825200 Weak transcription NHDF-Ad bronchial
29 chr1:173809800-173831800 Weak transcription Colonic Mucosa Colon
30 chr1:173810200-173822000 Weak transcription Fetal Kidney kidney
31 chr1:173811000-173824600 Weak transcription Colon Smooth Muscle Colon
32 chr1:173811000-173825000 Weak transcription Placenta Amnion Placenta Amnion
33 chr1:173811200-173818800 Weak transcription Brain Hippocampus Middle brain
34 chr1:173811200-173820600 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:173811200-173822200 Weak transcription Brain Cingulate Gyrus brain
36 chr1:173811200-173825000 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr1:173811200-173829200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:173811400-173820400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:173811400-173821400 Weak transcription Osteobl bone
40 chr1:173812000-173820600 Weak transcription H1 Cell Line embryonic stem cell
41 chr1:173813000-173822000 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:173813200-173818600 Weak transcription Lung lung
43 chr1:173813200-173819400 Weak transcription HMEC breast
44 chr1:173813200-173820600 Weak transcription NHEK skin
45 chr1:173813200-173821000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:173813200-173821400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:173813200-173822000 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr1:173813200-173822000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:173813200-173822000 Weak transcription HSMMtube muscle
50 chr1:173813200-173823000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015