Variant report

Variant	rs73027488
Chromosome Location	chr1:174028039-174028040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173991309..173994040-chr1:174026724..174028292,2	K562	blood:

Variant related genes	Relation type
ENSG00000135870	Chromatin interaction
ENSG00000224977	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1322769	1.00[AMR][1000 genomes]
rs16846483	1.00[AMR][1000 genomes]
rs16846832	1.00[AMR][1000 genomes]
rs2227620	1.00[AMR][1000 genomes]
rs57006357	1.00[AMR][1000 genomes]
rs57160755	0.87[AFR][1000 genomes]
rs57343517	1.00[AMR][1000 genomes]
rs57387965	1.00[AMR][1000 genomes]
rs57664780	1.00[AMR][1000 genomes]
rs58576036	1.00[AMR][1000 genomes]
rs58735809	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58930477	1.00[AMR][1000 genomes]
rs59355797	1.00[AMR][1000 genomes]
rs59466931	1.00[AMR][1000 genomes]
rs59846661	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6658347	0.90[AFR][1000 genomes]
rs6667627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025612	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025620	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027407	1.00[AMR][1000 genomes]
rs73027443	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027463	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027464	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027500	0.82[AFR][1000 genomes]
rs73029110	0.87[AFR][1000 genomes]
rs73032703	0.87[AFR][1000 genomes]
rs73032717	0.87[AFR][1000 genomes]
rs73036625	1.00[AMR][1000 genomes]
rs73036632	1.00[AMR][1000 genomes]
rs73036635	1.00[AMR][1000 genomes]
rs73036645	1.00[AMR][1000 genomes]
rs73036652	1.00[AMR][1000 genomes]
rs73036657	1.00[AMR][1000 genomes]
rs73037076	1.00[AMR][1000 genomes]
rs73037083	1.00[AMR][1000 genomes]
rs73037097	1.00[AMR][1000 genomes]
rs73041050	1.00[AMR][1000 genomes]
rs73041059	1.00[AMR][1000 genomes]
rs7531236	1.00[AMR][1000 genomes]
rs7534626	0.86[AFR][1000 genomes]
rs7547873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9726181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174027600-174028200	Enhancers	NH-A	brain

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