Variant report

Variant	rs73029110
Chromosome Location	chr1:174049878-174049879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57160755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57664780	0.86[AFR][1000 genomes]
rs58735809	0.87[AFR][1000 genomes]
rs61628461	0.86[AFR][1000 genomes]
rs6658347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027443	0.84[AFR][1000 genomes]
rs73027460	0.84[AFR][1000 genomes]
rs73027463	0.84[AFR][1000 genomes]
rs73027488	0.87[AFR][1000 genomes]
rs73027500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029104	1.00[AMR][1000 genomes]
rs73032703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034923	0.84[AFR][1000 genomes]
rs73036625	0.86[AFR][1000 genomes]
rs73036632	0.86[AFR][1000 genomes]
rs7534626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547873	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174047400-174050000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:174049000-174050800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:174049400-174050000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:174049600-174050000	Enhancers	K562	blood
5	chr1:174049600-174050200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:174049800-174050200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:174049800-174050200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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