Variant report

Variant	rs73024916
Chromosome Location	chr6:164318246-164318247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12199159	0.81[ASN][1000 genomes]
rs12200721	0.81[ASN][1000 genomes]
rs12205504	0.88[ASN][1000 genomes]
rs17443648	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884181	0.81[ASN][1000 genomes]
rs2064529	0.81[ASN][1000 genomes]
rs2064530	0.81[ASN][1000 genomes]
rs2064531	0.81[ASN][1000 genomes]
rs61410683	0.96[ASN][1000 genomes]
rs6912534	0.81[ASN][1000 genomes]
rs73022934	0.86[EUR][1000 genomes]
rs73022950	0.88[EUR][1000 genomes]
rs73024919	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73024927	0.88[ASN][1000 genomes]
rs9295244	0.81[ASN][1000 genomes]
rs9295245	0.81[ASN][1000 genomes]
rs9295246	0.81[ASN][1000 genomes]
rs9295247	0.81[ASN][1000 genomes]
rs9458926	0.81[ASN][1000 genomes]
rs9458927	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164317600-164319200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:164317800-164318400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:164317800-164318400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:164317800-164318600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:164318000-164318400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:164318000-164318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:164318000-164318400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:164318000-164318400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:164318000-164318600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:164318200-164318400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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