Variant report

Variant	rs73025639
Chromosome Location	chr2:178228761-178228762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57572550	1.00[AMR][1000 genomes]
rs58023539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58549185	1.00[AMR][1000 genomes]
rs61130794	1.00[AMR][1000 genomes]
rs73029355	1.00[AMR][1000 genomes]
rs73031362	1.00[AMR][1000 genomes]
rs73031364	1.00[AMR][1000 genomes]
rs73031369	1.00[AMR][1000 genomes]
rs73035197	1.00[AMR][1000 genomes]
rs73039087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv962042	chr2:178220899-178232397	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178218000-178256200	Weak transcription	HepG2	liver
3	chr2:178219200-178233600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:178225600-178231800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:178225600-178233000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:178227800-178228800	Enhancers	Ovary	ovary
8	chr2:178228200-178229000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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