Variant report

Variant	rs73031362
Chromosome Location	chr2:178113650-178113651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:174227156..174228745-chr2:178112850..178115836,2	K562	blood:
2	chr2:178109886..178112394-chr2:178113254..178117563,3	MCF-7	breast:
3	chr2:178076414..178079141-chr2:178112041..178114718,2	MCF-7	breast:
4	chr2:178105694..178108997-chr2:178110306..178114236,4	MCF-7	breast:
5	chr2:178112424..178116788-chr2:178259811..178263251,4	K562	blood:

Variant related genes	Relation type
ENSG00000229337	Chromatin interaction
ENSG00000263721	Chromatin interaction
ENSG00000170144	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57572550	1.00[AMR][1000 genomes]
rs58023539	1.00[AMR][1000 genomes]
rs58549185	1.00[AMR][1000 genomes]
rs61130794	1.00[AMR][1000 genomes]
rs73025432	1.00[AMR][1000 genomes]
rs73025447	1.00[AMR][1000 genomes]
rs73025639	1.00[AMR][1000 genomes]
rs73029340	1.00[AMR][1000 genomes]
rs73029355	1.00[AMR][1000 genomes]
rs73031364	1.00[AMR][1000 genomes]
rs73031369	1.00[AMR][1000 genomes]
rs73035197	1.00[AMR][1000 genomes]
rs73039087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834465	chr2:178067294-178115113	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178078600-178121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:178099400-178117600	Genic enhancers	HepG2	liver
3	chr2:178107200-178126000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:178107400-178114800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr2:178107800-178123000	Enhancers	Psoas Muscle	Psoas
6	chr2:178108000-178115400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:178108000-178116400	Enhancers	Ovary	ovary
8	chr2:178108200-178114600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:178108200-178115200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:178108200-178115400	Weak transcription	GM12878-XiMat	blood
11	chr2:178108200-178116800	Weak transcription	Fetal Kidney	kidney
12	chr2:178108200-178117000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:178108200-178118800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:178108200-178122600	Enhancers	Adipose Nuclei	Adipose
15	chr2:178108400-178114400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:178108400-178115000	Weak transcription	Primary T cells from cord blood	blood
17	chr2:178108600-178116200	Weak transcription	Colonic Mucosa	Colon
18	chr2:178108600-178116800	Weak transcription	Fetal Lung	lung
19	chr2:178108600-178117000	Weak transcription	Thymus	Thymus
20	chr2:178109200-178113800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr2:178109200-178118000	Enhancers	Right Atrium	heart
22	chr2:178109400-178118200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:178109600-178114000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr2:178110000-178113800	Genic enhancers	Fetal Intestine Small	intestine
25	chr2:178110200-178116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:178110200-178119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:178110400-178114000	Enhancers	K562	blood
28	chr2:178110400-178114600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:178110400-178116000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:178110400-178118600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr2:178110800-178118800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:178111000-178113800	Enhancers	Colon Smooth Muscle	Colon
33	chr2:178111000-178114000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:178111000-178114800	Weak transcription	Small Intestine	intestine
35	chr2:178111000-178115000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr2:178111000-178115200	Weak transcription	Dnd41	blood
37	chr2:178111000-178115400	Weak transcription	Placenta	Placenta
38	chr2:178111000-178116800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:178111000-178117800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr2:178111000-178119200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr2:178111000-178119600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:178111000-178119600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:178111200-178115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr2:178111200-178115200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:178111200-178115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr2:178111200-178115600	Weak transcription	HSMMtube	muscle
47	chr2:178111200-178116000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:178111200-178116000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr2:178111200-178116200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr2:178111200-178116200	Weak transcription	NH-A	brain

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