Variant report

Variant	rs73025657
Chromosome Location	chr2:178258729-178258730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:178258715-178259536	HepG2	liver:	n/a	chr2:178259089-178259104
2	RCOR1	chr2:178258563-178258915	K562	blood:	n/a	n/a
3	TEAD4	chr2:178258581-178259422	HepG2	liver:	n/a	n/a
4	USF2	chr2:178258683-178258745	GM12878	blood:	n/a	n/a
5	ZNF143	chr2:178258622-178258855	K562	blood:	n/a	n/a
6	FOXA2	chr2:178258468-178259785	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178256384..178259130-chr2:178415368..178419750,5	K562	blood:
2	chr2:178220224..178223052-chr2:178258523..178261393,2	K562	blood:
3	chr2:178199607..178202541-chr2:178258032..178259848,2	K562	blood:
4	chr2:178125970..178131401-chr2:178255081..178263132,15	K562	blood:
5	chr2:178257565..178262041-chr2:178276576..178279686,5	K562	blood:
6	chr2:178207678..178210773-chr2:178255899..178258732,5	K562	blood:
7	chr2:178128089..178131376-chr2:178255205..178259020,7	K562	blood:
8	chr2:178220224..178223061-chr2:178258523..178262241,3	K562	blood:
9	chr2:178255830..178259425-chr2:178483453..178485926,4	K562	blood:
10	chr2:178256384..178258999-chr2:178416044..178418294,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213963	TF binding region
NFE2L2	TF binding region
ENSG00000197557	Chromatin interaction
ENSG00000196659	Chromatin interaction
ENSG00000237178	Chromatin interaction
ENSG00000222043	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000238295	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16865334	0.83[AMR][1000 genomes]
rs6726942	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6731209	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025650	1.00[AFR][1000 genomes]
rs73025664	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025688	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025689	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73029113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029114	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031241	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73031244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031280	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7568487	0.83[AMR][1000 genomes]
rs7573086	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178256600-178258800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr2:178256600-178259000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr2:178256600-178259200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr2:178256600-178259800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:178256600-178260200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:178256800-178258800	Active TSS	H1 Cell Line	embryonic stem cell
7	chr2:178256800-178258800	Active TSS	Psoas Muscle	Psoas
8	chr2:178256800-178258800	Active TSS	Right Ventricle	heart
9	chr2:178256800-178258800	Active TSS	NHDF-Ad	bronchial
10	chr2:178256800-178259400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:178256800-178259600	Active TSS	HSMMtube	muscle
12	chr2:178256800-178259800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr2:178256800-178261200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:178257000-178258800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:178257000-178258800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:178257000-178259000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr2:178257000-178260000	Active TSS	Fetal Kidney	kidney
18	chr2:178257200-178258800	Active TSS	Fetal Intestine Large	intestine
19	chr2:178257200-178258800	Active TSS	GM12878-XiMat	blood
20	chr2:178257200-178259200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:178257400-178258800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:178257400-178258800	Active TSS	Stomach Smooth Muscle	stomach
23	chr2:178257400-178259400	Active TSS	NH-A	brain
24	chr2:178257800-178258800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:178257800-178258800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr2:178257800-178259000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr2:178257800-178259800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:178258000-178258800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr2:178258000-178258800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr2:178258000-178258800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:178258000-178258800	Flanking Active TSS	Fetal Heart	heart
32	chr2:178258000-178261800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:178258200-178258800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr2:178258200-178258800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:178258200-178258800	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr2:178258200-178258800	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr2:178258200-178258800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr2:178258200-178258800	Active TSS	Thymus	Thymus
39	chr2:178258200-178258800	Flanking Active TSS	HMEC	breast
40	chr2:178258200-178258800	Flanking Active TSS	NHEK	skin
41	chr2:178258200-178259000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr2:178258200-178259000	Flanking Active TSS	Osteobl	bone
43	chr2:178258200-178259200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:178258200-178259200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr2:178258200-178259600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr2:178258200-178259600	Flanking Active TSS	Liver	Liver
47	chr2:178258200-178259600	Flanking Active TSS	HUVEC	blood vessel
48	chr2:178258200-178260600	Flanking Active TSS	Dnd41	blood
49	chr2:178258400-178258800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:178258400-178258800	Flanking Active TSS	Primary B cells from cord blood	blood

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