Variant report

Variant	rs7573086
Chromosome Location	chr2:178350154-178350155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178349562..178352238-chr2:178592339..178594428,2	MCF-7	breast:
2	chr2:178348992..178351222-chr2:178354077..178355927,2	K562	blood:
3	chr2:178345786..178347641-chr2:178349999..178352420,2	K562	blood:
4	chr2:178336406..178340265-chr2:178346477..178351406,5	K562	blood:
5	chr2:178336406..178338882-chr2:178346745..178351095,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16865334	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs4893953	1.00[ASW][hapmap];0.92[MKK][hapmap]
rs60605045	0.89[AFR][1000 genomes]
rs6721316	0.84[LWK][hapmap]
rs6726942	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6731209	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025650	0.86[AFR][1000 genomes]
rs73025657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025664	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025688	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73025689	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73029113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029114	1.00[AMR][1000 genomes]
rs73029117	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031241	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73031244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031280	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7568487	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178296400-178397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:178298800-178357800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:178299400-178357800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr2:178330800-178356800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:178331000-178354600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:178331000-178357800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:178331000-178357800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:178331000-178361600	Weak transcription	Brain Substantia Nigra	brain
9	chr2:178331000-178378600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:178331200-178355000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:178331200-178358000	Weak transcription	Brain Angular Gyrus	brain
12	chr2:178331200-178378600	Weak transcription	Placenta	Placenta
13	chr2:178331200-178379200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:178331400-178388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:178331600-178351800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:178331600-178357800	Weak transcription	Colonic Mucosa	Colon
17	chr2:178331600-178385600	Weak transcription	Spleen	Spleen
18	chr2:178331800-178351200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:178331800-178360600	Weak transcription	Lung	lung
20	chr2:178331800-178373800	Weak transcription	Gastric	stomach
21	chr2:178331800-178375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:178331800-178375800	Weak transcription	Pancreas	Pancrea
23	chr2:178331800-178389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:178332000-178392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:178332000-178393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:178332800-178356800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:178335000-178410600	Weak transcription	Thymus	Thymus
28	chr2:178337400-178356800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr2:178337400-178357800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:178337400-178358000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr2:178337600-178386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:178337800-178352400	Weak transcription	Psoas Muscle	Psoas
33	chr2:178338000-178403000	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:178338200-178357800	Weak transcription	Fetal Intestine Large	intestine
35	chr2:178339000-178359800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:178339400-178351000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:178339400-178357800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:178339800-178394400	Weak transcription	Hela-S3	cervix
39	chr2:178340200-178358000	Weak transcription	Aorta	Aorta
40	chr2:178340200-178358000	Weak transcription	HSMMtube	muscle
41	chr2:178341800-178354400	Weak transcription	Fetal Kidney	kidney
42	chr2:178342400-178357800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:178342400-178392000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr2:178342600-178391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:178343000-178358000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:178343200-178357800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr2:178343200-178358000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:178343400-178354600	Weak transcription	Fetal Lung	lung
49	chr2:178343800-178379400	Weak transcription	NHEK	skin
50	chr2:178343800-178391200	Weak transcription	HMEC	breast

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