Variant report

Variant	rs73026442
Chromosome Location	chr1:174662219-174662220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174657293..174659127-chr1:174660705..174662538,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57654087	0.85[AFR][1000 genomes]
rs58499752	0.92[AFR][1000 genomes]
rs59123040	0.85[AFR][1000 genomes]
rs59297292	0.85[AFR][1000 genomes]
rs59692051	0.85[AFR][1000 genomes]
rs59876749	0.93[AFR][1000 genomes]
rs60510552	0.85[AFR][1000 genomes]
rs61556363	0.93[AFR][1000 genomes]
rs73026452	0.93[AFR][1000 genomes]
rs73040894	0.85[AFR][1000 genomes]
rs73040897	0.85[AFR][1000 genomes]
rs73040901	0.85[AFR][1000 genomes]
rs73042867	0.85[AFR][1000 genomes]
rs73042870	0.85[AFR][1000 genomes]
rs73042877	0.85[AFR][1000 genomes]
rs73042880	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174607600-174677800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174646800-174677600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:174646800-174680400	Weak transcription	Ovary	ovary
4	chr1:174648400-174665200	Weak transcription	Left Ventricle	heart
5	chr1:174649200-174668400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:174651200-174664600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:174651400-174665200	Weak transcription	Lung	lung
8	chr1:174651800-174673000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:174651800-174677400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:174652400-174677400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:174652400-174678800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:174653800-174669400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:174654400-174665200	Weak transcription	Primary T cells from cord blood	blood
14	chr1:174654400-174668200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:174657000-174669400	Weak transcription	GM12878-XiMat	blood
16	chr1:174658800-174665200	Weak transcription	Right Atrium	heart
17	chr1:174659400-174665000	Weak transcription	Fetal Intestine Large	intestine
18	chr1:174660600-174677600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:174661200-174662400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:174661200-174662400	Enhancers	Fetal Heart	heart
21	chr1:174661200-174662800	Enhancers	HepG2	liver
22	chr1:174661400-174662400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:174661400-174662600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:174661400-174662600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:174661600-174662800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr1:174661600-174663000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr1:174661800-174662800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr1:174662000-174673400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr1:174662200-174662600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:174662200-174662600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr1:174662200-174662800	Enhancers	HUES6 Cell Line	embryonic stem cell

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