Variant report

Variant	rs73026452
Chromosome Location	chr1:174680576-174680577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58499752	0.85[AFR][1000 genomes]
rs59876749	1.00[AFR][1000 genomes]
rs61556363	1.00[AFR][1000 genomes]
rs73026442	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174665800-174682600	Weak transcription	Left Ventricle	heart
2	chr1:174668400-174682600	Weak transcription	Gastric	stomach
3	chr1:174669600-174684000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:174672600-174682600	Weak transcription	Right Ventricle	heart
5	chr1:174678200-174689000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:174678200-174689200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:174678200-174708600	Weak transcription	Primary T cells from cord blood	blood
8	chr1:174678600-174682600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:174678600-174684400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:174678600-174706400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:174678800-174681400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:174679200-174687000	Weak transcription	Primary B cells from cord blood	blood
13	chr1:174680000-174681000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:174680000-174681000	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr1:174680000-174681200	ZNF genes & repeats	Fetal Intestine Large	intestine
16	chr1:174680200-174681000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:174680400-174680800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:174680400-174681000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:174680400-174681000	ZNF genes & repeats	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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