Variant report

Variant	rs73026458
Chromosome Location	chr1:174695475-174695476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174420323..174421165-chr1:174695373..174696419,3	MCF-7	breast:
2	chr1:174231547..174232813-chr1:174695220..174696649,6	MCF-7	breast:
3	chr1:174226894..174227818-chr1:174695415..174695933,2	MCF-7	breast:
4	chr1:174688388..174690592-chr1:174693450..174696212,2	MCF-7	breast:
5	chr1:174694751..174696916-chr1:174698462..174700573,2	K562	blood:
6	chr1:174420322..174421208-chr1:174695285..174696163,4	MCF-7	breast:
7	chr1:174231956..174232498-chr1:174695300..174696266,2	MCF-7	breast:
8	chr1:174382438..174383401-chr1:174695381..174696315,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10158706	1.00[AMR][1000 genomes]
rs56790431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57943240	1.00[AMR][1000 genomes]
rs58014193	0.83[AFR][1000 genomes]
rs61281388	0.89[AFR][1000 genomes]
rs73026416	1.00[AMR][1000 genomes]
rs73026437	0.83[AFR][1000 genomes]
rs73026457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73026469	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174678200-174708600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:174678600-174706400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:174682200-174704800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:174687800-174705200	Weak transcription	Primary B cells from cord blood	blood
5	chr1:174689000-174695800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:174694200-174696000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:174695200-174695800	Enhancers	HepG2	liver
8	chr1:174695400-174695600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:174695400-174695600	Enhancers	Fetal Intestine Large	intestine
10	chr1:174695400-174696600	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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