Variant report

Variant	rs10158706
Chromosome Location	chr1:174575043-174575044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56674178	0.83[AFR][1000 genomes]
rs56790431	1.00[AMR][1000 genomes]
rs57943240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59171291	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60974322	0.88[AFR][1000 genomes]
rs61439796	0.83[AFR][1000 genomes]
rs61457642	0.91[AFR][1000 genomes]
rs73026416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73026457	1.00[AMR][1000 genomes]
rs73026458	1.00[AMR][1000 genomes]
rs73038674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038676	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040852	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv999295	chr1:174457532-174596961	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3434296	chr1:174556344-174594264	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174566800-174586600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:174568400-174588800	Weak transcription	Esophagus	oesophagus
3	chr1:174570400-174575800	Weak transcription	Gastric	stomach
4	chr1:174572600-174587800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:174572800-174606200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:174573000-174575600	Weak transcription	Spleen	Spleen
7	chr1:174573000-174587200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:174573200-174581800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:174573200-174589000	Weak transcription	Ovary	ovary
10	chr1:174573400-174575200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:174573400-174577800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr1:174573400-174584400	Weak transcription	Fetal Stomach	stomach
13	chr1:174573400-174586800	Weak transcription	Pancreas	Pancrea
14	chr1:174573400-174587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:174573400-174587400	Weak transcription	Primary T cells from cord blood	blood
16	chr1:174573600-174584400	Weak transcription	Fetal Intestine Small	intestine
17	chr1:174574000-174587000	Weak transcription	Primary B cells from cord blood	blood
18	chr1:174574400-174588800	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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