Variant report

Variant	rs73038674
Chromosome Location	chr1:174383145-174383146
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174382438..174383401-chr1:174695381..174696315,3	MCF-7	breast:
2	chr1:174382494..174383374-chr1:174713222..174713791,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10158706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12565430	0.83[AFR][1000 genomes]
rs16846857	1.00[AMR][1000 genomes]
rs57941293	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57943240	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59171291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59773424	1.00[AMR][1000 genomes]
rs60974322	0.86[AFR][1000 genomes]
rs61019753	1.00[AMR][1000 genomes]
rs61457642	0.83[AFR][1000 genomes]
rs73034945	1.00[AMR][1000 genomes]
rs73036674	1.00[AMR][1000 genomes]
rs73038639	1.00[AMR][1000 genomes]
rs73038676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040852	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv1799250	chr1:174119038-174484277	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv465672	chr1:174133251-174469905	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv548194	chr1:174133251-174469905	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv470746	chr1:174150850-174469905	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1010069	chr1:174215293-174539512	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv872555	chr1:174343705-174565720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1003113	chr1:174367687-174499155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv535209	chr1:174367687-174499155	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174376000-174387200	Weak transcription	Gastric	stomach
2	chr1:174377000-174383200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:174381200-174438800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174382000-174383600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:174382200-174383400	Enhancers	NHLF	lung
6	chr1:174382400-174383600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:174382600-174383400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:174382800-174383200	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:174382800-174383200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:174382800-174383200	Enhancers	Left Ventricle	heart
11	chr1:174382800-174383400	Enhancers	NHDF-Ad	bronchial
12	chr1:174382800-174384000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:174382800-174384200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:174383000-174383200	Enhancers	Esophagus	oesophagus
15	chr1:174383000-174383200	Flanking Active TSS	Right Atrium	heart
16	chr1:174383000-174383200	Enhancers	GM12878-XiMat	blood
17	chr1:174383000-174383400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:174383000-174383400	Enhancers	Dnd41	blood
19	chr1:174383000-174383400	Enhancers	Osteobl	bone
20	chr1:174383000-174383800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:174383000-174383800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:174383000-174383800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:174383000-174383800	Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links