Variant report

Variant	rs73028926
Chromosome Location	chr4:187505082-187505083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:187500135..187502809-chr4:187503552..187505975,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1280106	0.96[ASN][1000 genomes]
rs1280108	0.96[ASN][1000 genomes]
rs2289549	0.96[ASN][1000 genomes]
rs2306988	0.96[ASN][1000 genomes]
rs2306989	0.96[ASN][1000 genomes]
rs3775310	0.96[ASN][1000 genomes]
rs3822059	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56299146	0.92[ASN][1000 genomes]
rs57904525	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73028920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73028929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73028935	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73028936	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73028943	0.96[ASN][1000 genomes]
rs73028948	0.96[ASN][1000 genomes]
rs7680937	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023052	chr4:187244679-187534428	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1016739	chr4:187249894-187534428	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv461866	chr4:187262489-187529904	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv596417	chr4:187262489-187529904	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1022113	chr4:187268460-187534065	Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024953	chr4:187332658-187525542	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv537435	chr4:187332658-187525542	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1016261	chr4:187332658-187564927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv537436	chr4:187332658-187564927	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv525719	chr4:187411297-187521037	Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
15	nsv1015619	chr4:187442453-187595058	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1023800	chr4:187444255-187593799	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187491600-187516400	Weak transcription	Colonic Mucosa	Colon
2	chr4:187493000-187506600	Weak transcription	Fetal Kidney	kidney
3	chr4:187495800-187514600	Weak transcription	Stomach Mucosa	stomach
4	chr4:187499200-187507400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:187499400-187514600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:187501200-187527400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:187501200-187542400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:187501400-187527400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:187501800-187509000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:187501800-187562200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:187502000-187507400	Weak transcription	Pancreas	Pancrea
12	chr4:187502000-187516400	Weak transcription	Esophagus	oesophagus
13	chr4:187502200-187506000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:187502200-187509600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:187502400-187516600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:187502400-187521200	Weak transcription	Small Intestine	intestine
17	chr4:187502600-187505800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:187502600-187506200	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr4:187502800-187505800	Strong transcription	HSMMtube	muscle
20	chr4:187502800-187535200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:187503000-187527600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:187503200-187509600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:187503200-187510800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:187503400-187506600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:187503400-187507000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:187503400-187508200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr4:187503400-187509600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:187503600-187507400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:187503600-187507400	Weak transcription	Ovary	ovary
30	chr4:187503600-187508000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:187503800-187505200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:187503800-187507800	Strong transcription	Fetal Intestine Large	intestine
33	chr4:187503800-187507800	Strong transcription	Fetal Stomach	stomach
34	chr4:187503800-187508000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:187503800-187509600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr4:187503800-187509600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:187503800-187527400	Strong transcription	NH-A	brain
38	chr4:187503800-187533000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr4:187503800-187542600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:187504000-187505200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:187504000-187505600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr4:187504000-187507800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:187504000-187507800	Strong transcription	Fetal Muscle Leg	muscle
44	chr4:187504000-187509400	Weak transcription	Gastric	stomach
45	chr4:187504000-187514400	Strong transcription	NHDF-Ad	bronchial
46	chr4:187504000-187515400	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr4:187504200-187506000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr4:187504200-187507200	Strong transcription	Osteobl	bone
49	chr4:187504200-187510600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr4:187504200-187554600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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