Variant report

Variant	rs73028945
Chromosome Location	chr3:158380694-158380695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158371996..158373606-chr3:158379700..158381339,2	K562	blood:
2	chr3:158377989..158381016-chr3:158389998..158392287,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079257	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13316522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28825222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28838673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28892926	1.00[AFR][1000 genomes]
rs60378784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028942	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9810232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9815159	1.00[AMR][1000 genomes]
rs9828477	1.00[AMR][1000 genomes]
rs9830695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833662	1.00[AMR][1000 genomes]
rs9846674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9860148	1.00[AMR][1000 genomes]
rs9864685	1.00[AMR][1000 genomes]
rs9867378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2763312	chr3:158193512-158420588	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv869644	chr3:158308783-158426343	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3399089	chr3:158356055-158410094	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158362800-158389600	Weak transcription	Gastric	stomach
2	chr3:158362800-158389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:158362800-158390000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:158363000-158381800	Weak transcription	Esophagus	oesophagus
5	chr3:158363200-158389400	Weak transcription	Fetal Brain Male	brain
6	chr3:158363600-158389400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:158363800-158388200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:158363800-158388600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:158364000-158385400	Weak transcription	Fetal Heart	heart
10	chr3:158364000-158387400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:158364000-158388400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr3:158364200-158385800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:158364200-158388200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:158364400-158388600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:158364800-158388000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr3:158364800-158391000	Strong transcription	Dnd41	blood
17	chr3:158366400-158388000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:158367000-158387600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr3:158369600-158388200	Strong transcription	Placenta	Placenta
20	chr3:158369800-158388200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:158370000-158385000	Strong transcription	Hela-S3	cervix
22	chr3:158370600-158386200	Weak transcription	Small Intestine	intestine
23	chr3:158372200-158389800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:158373000-158384200	Weak transcription	Colonic Mucosa	Colon
25	chr3:158374600-158389400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:158375000-158389400	Weak transcription	Stomach Mucosa	stomach
27	chr3:158376000-158387400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:158376000-158387600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:158376000-158388000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:158376000-158388600	Strong transcription	Fetal Thymus	thymus
31	chr3:158376200-158388000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:158376200-158388000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:158376400-158385800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:158376400-158386600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:158376400-158387600	Strong transcription	GM12878-XiMat	blood
36	chr3:158376400-158388000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:158376600-158382000	Genic enhancers	HUVEC	blood vessel
38	chr3:158376600-158386600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:158376600-158386600	Strong transcription	HMEC	breast
40	chr3:158376600-158388000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:158376600-158388000	Strong transcription	Primary B cells from cord blood	blood
42	chr3:158376600-158388000	Strong transcription	Liver	Liver
43	chr3:158376600-158388200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:158376600-158388400	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:158376600-158388600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:158376600-158388600	Strong transcription	Adipose Nuclei	Adipose
47	chr3:158376600-158389000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:158376600-158389400	Strong transcription	K562	blood
49	chr3:158376600-158390200	Strong transcription	HSMM	muscle
50	chr3:158377000-158389600	Weak transcription	Pancreas	Pancrea

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