Variant report

Variant	rs9860148
Chromosome Location	chr3:158262159-158262160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13316522	1.00[AMR][1000 genomes]
rs28825222	1.00[AMR][1000 genomes]
rs28838673	1.00[AMR][1000 genomes]
rs60378784	1.00[AMR][1000 genomes]
rs6781894	1.00[AMR][1000 genomes]
rs73024716	1.00[AMR][1000 genomes]
rs73028908	1.00[AMR][1000 genomes]
rs73028942	1.00[AMR][1000 genomes]
rs73028945	1.00[AMR][1000 genomes]
rs73030846	1.00[AMR][1000 genomes]
rs9810232	1.00[AMR][1000 genomes]
rs9814215	1.00[AMR][1000 genomes]
rs9815159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9828477	1.00[AMR][1000 genomes]
rs9830695	1.00[AMR][1000 genomes]
rs9833662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846674	1.00[AMR][1000 genomes]
rs9864685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9867378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv877690	chr3:158184263-158296916	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2763312	chr3:158193512-158420588	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv916167	chr3:158240540-158320581	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877691	chr3:158245883-158359667	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158249400-158264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:158252600-158267400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:158255200-158263800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:158256200-158264600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:158256600-158280000	Weak transcription	K562	blood
6	chr3:158257000-158262400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:158257400-158262200	Weak transcription	Liver	Liver
8	chr3:158257800-158268000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:158258000-158265000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:158258000-158265000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:158258000-158268600	Weak transcription	Pancreas	Pancrea
12	chr3:158258200-158268200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:158259600-158267600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:158259800-158262800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:158259800-158263000	Weak transcription	Placenta	Placenta
16	chr3:158259800-158264600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:158259800-158266000	Weak transcription	NHDF-Ad	bronchial
18	chr3:158259800-158267400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:158259800-158270000	Weak transcription	Ovary	ovary
20	chr3:158260000-158279200	Weak transcription	Left Ventricle	heart
21	chr3:158260400-158270600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:158260600-158262800	Strong transcription	Dnd41	blood
23	chr3:158261000-158262600	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:158261000-158262800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr3:158261200-158262400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:158261200-158262600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:158261200-158266800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:158261400-158262200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:158261400-158264800	Weak transcription	Aorta	Aorta
30	chr3:158261400-158265400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:158261600-158262600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:158261800-158262200	Weak transcription	Fetal Heart	heart
33	chr3:158261800-158265600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:158261800-158266400	Weak transcription	A549	lung

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