Variant report

Variant	rs73029152
Chromosome Location	chr1:170532078-170532079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:170500022..170503968-chr1:170530331..170533615,3	MCF-7	breast:
2	chr1:170531920..170533774-chr1:170534494..170536733,2	MCF-7	breast:
3	chr1:170524609..170527815-chr1:170530130..170532352,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120370	Chromatin interaction
ENSG00000231407	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10919427	0.83[AFR][1000 genomes]
rs10919428	0.81[AFR][1000 genomes]
rs12075840	0.83[AFR][1000 genomes]
rs12097444	0.81[AFR][1000 genomes]
rs2901402	0.87[AFR][1000 genomes]
rs59597526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60696673	0.81[AFR][1000 genomes]
rs6676293	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170521600-170532600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:170522200-170532200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:170522200-170532400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:170528200-170532800	Weak transcription	Aorta	Aorta
5	chr1:170528800-170532200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:170529800-170533800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:170530000-170533800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr1:170531400-170532200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:170531400-170532400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:170531400-170532800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:170531400-170532800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:170531400-170532800	Enhancers	Ovary	ovary
13	chr1:170531400-170533000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:170531400-170533200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:170531400-170533200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:170531400-170533200	Enhancers	HMEC	breast
17	chr1:170531400-170533400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:170531400-170533400	Enhancers	Hela-S3	cervix
19	chr1:170531400-170533800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:170531400-170533800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:170531400-170534000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:170531400-170535400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:170531400-170537600	Enhancers	NHDF-Ad	bronchial
24	chr1:170531600-170532200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:170531600-170532200	Enhancers	Esophagus	oesophagus
26	chr1:170531600-170532200	Enhancers	GM12878-XiMat	blood
27	chr1:170531600-170532400	Active TSS	HSMMtube	muscle
28	chr1:170531600-170532600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:170531600-170532600	Flanking Active TSS	NHEK	skin
30	chr1:170531600-170532800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:170531600-170532800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:170531600-170532800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr1:170531600-170532800	Enhancers	Placenta	Placenta
34	chr1:170531600-170532800	Enhancers	Spleen	Spleen
35	chr1:170531600-170532800	Flanking Active TSS	Dnd41	blood
36	chr1:170531600-170532800	Enhancers	HSMM	muscle
37	chr1:170531600-170533000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:170531600-170533000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr1:170531600-170533000	Enhancers	Right Atrium	heart
40	chr1:170531600-170533200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:170531600-170533800	Enhancers	H1 Cell Line	embryonic stem cell
42	chr1:170531600-170533800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:170531600-170533800	Enhancers	NH-A	brain
44	chr1:170531600-170534000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr1:170531600-170534000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr1:170531800-170532200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:170531800-170532200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr1:170531800-170532400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:170531800-170532400	Enhancers	Primary T cells fromperipheralblood	blood
50	chr1:170531800-170532400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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