Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10753816	0.80[ASN][1000 genomes]
rs10919422	0.81[EUR][1000 genomes]
rs10919427	0.89[AFR][1000 genomes]
rs10919428	0.86[AFR][1000 genomes]
rs10919432	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11583564	1.00[CHB][hapmap]
rs11801783	0.91[ASN][1000 genomes]
rs12071298	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12097444	0.86[AFR][1000 genomes]
rs12729774	0.93[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12731618	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12743310	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12744632	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12755330	1.00[CHB][hapmap]
rs2901402	0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs35392130	0.92[EUR][1000 genomes]
rs59597526	0.94[AFR][1000 genomes]
rs60696673	0.86[AFR][1000 genomes]
rs6663850	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6676293	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73029152	0.83[AFR][1000 genomes]
rs7515690	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7552922	0.93[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs913257	1.00[JPT][hapmap]
rs9919189	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170537800-170549800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:170547200-170549200	Enhancers	NHDF-Ad	bronchial
3	chr1:170547200-170551200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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