Variant report

Variant	rs9919189
Chromosome Location	chr1:170552657-170552658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10753816	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10919432	0.84[ASN][1000 genomes]
rs11583564	0.85[CHB][hapmap]
rs11801783	0.80[ASN][1000 genomes]
rs12071298	0.80[ASN][1000 genomes]
rs12075840	0.80[ASN][1000 genomes]
rs12729774	0.85[CHB][hapmap]
rs12731618	0.84[ASN][1000 genomes]
rs12743310	0.84[ASN][1000 genomes]
rs12744632	0.84[ASN][1000 genomes]
rs12755330	0.85[CHB][hapmap]
rs6663850	0.80[ASN][1000 genomes]
rs6676293	0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7515690	0.85[CHB][hapmap]
rs7552922	1.00[JPT][hapmap]
rs913257	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170550400-170555600	Weak transcription	Osteobl	bone
2	chr1:170550600-170554600	Weak transcription	NHDF-Ad	bronchial
3	chr1:170550600-170555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:170550600-170555200	Weak transcription	Aorta	Aorta
5	chr1:170550800-170555000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:170550800-170555200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:170551200-170553800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:170552200-170552800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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