Variant report

Variant	rs73029202
Chromosome Location	chr2:182088007-182088008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56977169	0.81[AFR][1000 genomes]
rs59161684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027403	1.00[AMR][1000 genomes]
rs73027409	1.00[AMR][1000 genomes]
rs73027412	1.00[AMR][1000 genomes]
rs73027417	1.00[AMR][1000 genomes]
rs73027429	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027441	0.81[AFR][1000 genomes]
rs73027455	0.81[AFR][1000 genomes]
rs73027466	0.81[AFR][1000 genomes]
rs73027468	0.81[AFR][1000 genomes]
rs73027474	0.81[AFR][1000 genomes]
rs73027482	0.81[AFR][1000 genomes]
rs73027499	0.81[AFR][1000 genomes]
rs73027502	0.81[AFR][1000 genomes]
rs73029106	0.85[AFR][1000 genomes]
rs73031204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041031	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182086400-182090600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr2:182087000-182089800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr2:182087000-182090600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:182087000-182091000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:182087200-182090000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr2:182087400-182090600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:182087600-182089400	Enhancers	Primary T cells from cord blood	blood
8	chr2:182087600-182090200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:182087600-182090400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr2:182087800-182088200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:182088000-182088200	Enhancers	Dnd41	blood
12	chr2:182088000-182088400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:182088000-182089400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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