Variant report

Variant	rs73032120
Chromosome Location	chr2:180727782-180727783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59752136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032165	1.00[AMR][1000 genomes]
rs73032174	1.00[AMR][1000 genomes]
rs73032177	1.00[AMR][1000 genomes]
rs73036177	1.00[AMR][1000 genomes]
rs73046852	1.00[AMR][1000 genomes]
rs73046873	1.00[AMR][1000 genomes]
rs73046902	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875472	chr2:180696414-181024926	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875473	chr2:180696414-181055597	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180726800-180727800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180727000-180727800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr2:180727000-180728000	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr2:180727000-180728200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:180727200-180727800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr2:180727200-180728000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr2:180727400-180727800	Enhancers	Psoas Muscle	Psoas
8	chr2:180727600-180727800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr2:180727600-180727800	Bivalent Enhancer	NHEK	skin
10	chr2:180727600-180728200	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr2:180727600-180728200	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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