Variant report

Variant	rs73032555
Chromosome Location	chr2:179192799-179192800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179186226..179189549-chr2:179191387..179194072,3	K562	blood:
2	chr2:179183577..179186418-chr2:179191406..179193848,2	MCF-7	breast:
3	chr2:179192053..179195565-chr2:179199855..179202518,3	K562	blood:

Variant related genes	Relation type
ENSG00000079156	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59650700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59909690	0.96[AFR][1000 genomes]
rs59920072	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60248353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61693478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6724166	0.92[AFR][1000 genomes]
rs73032559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032572	0.96[AFR][1000 genomes]
rs73032575	0.90[AFR][1000 genomes]
rs73032582	0.87[AFR][1000 genomes]
rs73032583	0.96[AFR][1000 genomes]
rs7563849	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7579706	0.90[AFR][1000 genomes]
rs7590212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7591753	0.96[AFR][1000 genomes]
rs7602359	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
2	chr2:179176200-179198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:179183800-179247800	Weak transcription	Psoas Muscle	Psoas
4	chr2:179185400-179198200	Weak transcription	Fetal Lung	lung
5	chr2:179186000-179195000	Weak transcription	Liver	Liver
6	chr2:179188800-179195000	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:179189000-179193400	Weak transcription	K562	blood
8	chr2:179189200-179196800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:179189200-179201200	Weak transcription	Ovary	ovary
10	chr2:179189400-179201200	Weak transcription	Fetal Brain Male	brain
11	chr2:179189800-179217000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:179190600-179195800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:179191800-179194000	Enhancers	HSMM	muscle
14	chr2:179192000-179193200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:179192000-179193600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:179192200-179193200	Enhancers	HepG2	liver
17	chr2:179192200-179193200	Flanking Active TSS	HSMMtube	muscle
18	chr2:179192200-179193400	Enhancers	Fetal Intestine Small	intestine
19	chr2:179192400-179192800	Flanking Active TSS	Osteobl	bone
20	chr2:179192400-179193000	Enhancers	NH-A	brain
21	chr2:179192400-179193400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:179192600-179193000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:179192600-179193000	Enhancers	Brain Angular Gyrus	brain
24	chr2:179192600-179193000	Enhancers	Fetal Intestine Large	intestine
25	chr2:179192600-179193000	Enhancers	Fetal Kidney	kidney
26	chr2:179192600-179193000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:179192600-179193200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:179192600-179198600	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:179192600-179200600	Weak transcription	Brain Inferior Temporal Lobe	brain

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