Variant report

Variant	rs7602359
Chromosome Location	chr2:179188740-179188741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16866191	1.00[JPT][hapmap]
rs59650700	0.90[AFR][1000 genomes]
rs59909690	0.85[AFR][1000 genomes]
rs59920072	0.89[AFR][1000 genomes]
rs60248353	0.92[AFR][1000 genomes]
rs61693478	0.92[AFR][1000 genomes]
rs6724166	0.85[AFR][1000 genomes]
rs73032555	0.89[AFR][1000 genomes]
rs73032559	0.85[AFR][1000 genomes]
rs73032572	0.85[AFR][1000 genomes]
rs73032583	0.85[AFR][1000 genomes]
rs7563849	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7579706	0.83[AFR][1000 genomes]
rs7590212	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs7591753	0.90[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
2	chr2:179176200-179198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:179183800-179188800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:179183800-179192600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:179183800-179247800	Weak transcription	Psoas Muscle	Psoas
6	chr2:179185400-179198200	Weak transcription	Fetal Lung	lung
7	chr2:179186000-179195000	Weak transcription	Liver	Liver
8	chr2:179188400-179189200	Enhancers	Ovary	ovary
9	chr2:179188400-179189400	Enhancers	Fetal Brain Male	brain
10	chr2:179188600-179188800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:179188600-179188800	Active TSS	Brain Hippocampus Middle	brain
12	chr2:179188600-179189000	Active TSS	Brain Anterior Caudate	brain
13	chr2:179188600-179189000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:179188600-179189000	Enhancers	K562	blood
15	chr2:179188600-179189200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:179188600-179189200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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